(r36) SiDTrackingEfficiencies < LinearCollider

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---+Master by Research (MRes) project of Bogdan Mishchenko :"Simulation, reconstruction, Physics sensitivity studies for  the SiD(Sillicon Detector)   "


%TOC%

---+++ Project Aim

The main aim of the project is the Physics sensitivity studies(Higgs physics, top quark
Physics, beyond standart model physics) at future ILC(International Linear Collider). The
project focused on simulation, reconstruction, physics analysis of  of the  results Tracking system  from SiD(Sillicon Detector).
Below you can find  link to the brief report on the progress:

   * [[%PUBURLPATH%/%WEB%/%TOPIC%/Brief_report.pdf][Brief_report.pdf]]

---++ SiD detector model

SiD detector mentioned above is the one of two detector concepts proposed for ILC. Below you can see layout of the detector. My thesis is focused mostly on the Tracker subsystem. Please refer to the report that will be attached later on for more details on it.

     <img src="%PUBURLPATH%/%WEB%/%TOPIC%/SiD_layout.jpeg" alt="SiD_layout.jpeg" width="800" height="458" />

This is angle coverage for SiD Tracker system. For low angles from beamline(<40^{0}) acceptance will be mostly by endcaps(inner outter vertex disks and tracker disks), while for angles greater then 40^{0} will be mostly Barrel(Vertex and Tracker). 

     <img src="%PUBURLPATH%/%WEB%/%TOPIC%/angle_coverage.png" alt="angle_coverage.png" width="800" height="458" />

---++ Generation/simulation chain
Prior simulation of detector response of  the SiD,  we need to generate particles. In the simple case it can  be running script that specifies PDG number of particle, 4 vector of particle and other usefull parameters. 
---+++ How to generate file with blank of  particles
Assuming that you have installed lcgeo(linear collider geometry package). If not, follow instruction on https://twiki.ppe.gla.ac.uk/bin/view/LinearCollider/GlaSiDGettingStarted . On the fresh login to terminal execute :
<verbatim>
source /cvmfs/sft.cern.ch/lcg/releases/gcc/4.8.4/x86_64-slc6/setup.sh
source /cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/init_ilcsoft.sh
cd lcgeo/
python example/lcio_particle_gun.py (where you specify PDG and incident angle \theta  and number of generated particles and other parameters)
Do the following command to have a look inside the file:
anajob mcparticles.slcio (prints MCParticle collection for each event)
or 
dumpevent mcparticles.slcio (prints details of MCParticle collection for each event)
Run the simulation:bogdanmishchenko
ddsim --compactFile=SiD/compact/SiD_o1_v01/SiD_o1_v03.xml --runType=batch --inputFile mcparticles.slcio -N=10  --outputFile=testSiD_o1_v03.slcio
anajob testSiD_o1_v03.slcio (prints MCParticle collection and hit collections for different subdetector parts (SiTrackerBarrelHits of SimTrackerHit type) and other collections )
</verbatim>

---++ Digitization/reconstruction chain
---+++ MC TruthTracking
Aim of the MC(Monte Carlo) Truth Tracking is to get make sure that we can get sensible results from analysis of the data from the simulation/reconstruction chain. 
---++++Definitions


---++++ Description of the reconstruction code, How to run it.
Reconstruction code for SiD  was adopted from CLIC (Clicperformance package), which you can find here :

https://svnsrv.desy.de/viewvc/marlinreco/ClicPerformance/trunk/Tracking/

Some macros and scripts have been used from ILD performance package, which you can find here:

https://svnsrv.desy.de/viewvc/marlinreco/ILDPerformance/trunk/tracking/

It has following modifications: 
For layer residuals code we are using hard coded SiDecoderString: "subdet:6,side:3,layer:4,module:12,sensor:1" for decoding. Additionally, We do not do  refitting and extrapolating of  tracks, what have been implemented in the CLIC code. 
 
Assuming that you are on the fresh login in terminal:
<verbatim>
source /cvmfs/sft.cern.ch/lcg/releases/gcc/4.8.4/x86_64-slc6/setup.sh
source /cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/init_ilcsoft.sh
 cd lcgeo/
wget https://twiki.ppe.gla.ac.uk/pub/LinearCollider/SiDTrackingEfficiencies/Tracking_2_12_16.tar.gz  (To get the reconstruction code)
tar xvzf Tracking_2_12_16.tar.gz Tracking/ (To unpack archive)
cd Tracking/
find(to list all files in the directory)
./src(directory with Marlin processor source codes)
./src/Global_residuals.cc (processor that output residuals, pulls for hits)
./src/HitResiduals.cc (processor that output layer residuals )
./src/ResidualsCalculator.cc( processor that calculates trackreconstruction efficiencies versus, pt(transverse momentum, theta, eta(pseudorapidity)
./include ( directory that contains header files)
./include/Global_residuals.h 
./include/HitResiduals.h
./include/ResidualsCalculator.h
./include/LinkDef.h
./include/fpcompare.h
./CMakeLists.txt ( CMake configuration file )
./SiDReconstruction_161910_new_bogdan.xml (Marlin steering file)

Then: 
mkdir build  lib ( make directories)
cd build/
cmake -DCMAKE_CXX_COMPILER=`which g++` -DCMAKE_C_COMPILER=`which gcc` \
  -DILCUTIL_DIR=/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/ilcutil/v01-03/ -C $ILCSOFT/ILCSoft.cmake ..
make 
make install
After successful compilation you will get something like this:
[100%] Built target TrackAna
Install the project...
-- Install configuration: "RelWithDebInfo"
-- Installing: /afs/phas.gla.ac.uk/user/b/bogdanm/public_ppe/Tracking/lib/libTrackAna.so.1.0.0
-- Installing: /afs/phas.gla.ac.uk/user/b/bogdanm/public_ppe/Tracking/lib/libTrackAna.so.1.0
-- Installing: /afs/phas.gla.ac.uk/user/b/bogdanm/public_ppe/Tracking/lib/libTrackAna.so
-- Set runtime path of "/afs/phas.gla.ac.uk/user/b/bogdanm/public_ppe/Tracking/lib/libTrackAna.so.1.0.0" to "/afs/phas.gla.ac.uk/user/b/bogdanm/public_ppe/Tracking/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/root/6.06.02/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/Marlin/v01-09/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/lcio/v02-07-02/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/gear/v01-06/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/CLHEP/2.1.4.1/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/ilcutil/v01-03/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/MarlinTrk/v02-02/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/RAIDA/v01-07/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/DD4hep/v00-16/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/MarlinUtil/v01-12/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/v01-17-10/CED/v01-09-01/lib:/cvmfs/ilc.desy.de/sw/x86_64_gcc48_sl6/gsl/2.1/lib"

cd ..
export MARLIN_DLL=$MARLIN_DLL:$PWD/lib/libTrackAna.so  (to link Marlin with compiled object files)
Marlin -c SiDReconstruction_021216_new_bogdan.xml(check given  steering file for consistency) 
Marlin SiDReconstruction_021216_new_bogdan.xml(with specifying slcio file (testSiD_o1_v03_1000_muons_Angle_40_Momentum_10.slcio))

ls -ltr 
You will get such files:
-rw-r--r-- 1 bogdanm ilc 3146400 Dec  2 13:32 SiD_Tracks_SiD_o1_v03_100_muons_Angle_40_Momentum_10.slcio (slcio file  with tracking information (you can use it afterwards for visualization)
-rw-r--r-- 1 bogdanm ilc   11734 Dec  2 13:32 hit_residuals_SiD_o1_v03_100_muons_Angle_40_Momentum_10.root (root file  with residuals per later)
-rw-r--r-- 1 bogdanm ilc  131753 Dec  2 13:32 global_residuals_SiD_o1_v03_100_muons_Angle_40_Momentum_10.root(root file  with pulls, residuals  of track parameters)
-rw-r--r-- 1 bogdanm ilc   16593 Dec  2 13:32 digi_processors_SiD_o1_v03_100_muons_Angle_40_Momentum_10.root(root file  with efficiencies(versus angle or momentum)


</verbatim>


---++++ How to produce  Hit residuals

<img src="%PUBURLPATH%/%WEB%/%TOPIC%//residuals_40_tracker_barrel.png" alt="residuals_40_tracker_barrel.png" width="1099" height="833" /> 

---++++ How to produce  Hit pull distributions 
<verbatim>
If you will specify in the in the  pulls.cxx script  root file : (TFile *residuals = new TFile("analysis_100_40_10_mu.root")) and then:
root pulls.cxx
</verbatim>
Below you can find Pulls distribution track parameters, which indicate good performance of the MC Truth Tracking(Gaussian distributions  with mean close to 0 and sigma close to 1(small box) ): 

<img src="%PUBURLPATH%/%WEB%/%TOPIC%//pull_residuals_40.jpg" alt="pull_residuals_40.jpg" width="1099" height="833" /> 


---++++  How to produce  Tracking efficiencies 
Efficiency of track reconstruction depends on the theta angle(angle between projection of momentum on z axis and momentum) and transverse momentum. You can see below dependence on theta for SiD_o1_v03 version of detector model. As you have noticed efficiency of reconstruction falls significantly after 40 due, to the problems with Forward Tracking Disks (after 120^{0} )  and Endcaps(both Tracker and Vertex) (< 40^{0} ).

   <img src="%PUBURLPATH%/%WEB%/%TOPIC%/eff_versus_theta.png" alt="eff_versus_theta.png" width="974" height="491" />

This is tracking efficiency for momentum range [1,500]GeV

   * Tracking efficiency for SiD_o2_v01: <br />
     <img src="%PUBURLPATH%/%WEB%/%TOPIC%/Tracking_efficiency_20_40_85.png" alt="Tracking_efficiency_20_40_85.png" width="974" height="491" />

---++++ How to produce  track parameter resolutions (d_{0}, z_{0}, pt)

D0_resolution can be produced by running following script D0_resolution_angle.cxx: <br />
     <img src="%PUBURLPATH%/%WEB%/%TOPIC%/D0_resolution_40_85_SiD_o2_v01.png" alt="D0_resolution_40_85_SiD_o2_v01.png" width="974" height="491" />


Z0 resolution obtained using Z0resolution.cxx script

 <br />
     <img src="%PUBURLPATH%/%WEB%/%TOPIC%/Z0_resolution_40_85_SiD_o2_v01.png" alt="Z0_resolution_40_85_SiD_o2_v01.png" width="974" height="491" />

On the  figure below you can see Transverse momentum resolution obtained in  the new framework and comparison with Detailed Baseline Design report from 2012(following figure)
* This is Pt resolution obtained with SiD_o1_v03 model using momentumres_angle.cxx script:


   * This is Pt resolution obtained with SiD_o2_v01 module: <br />
     <img src="%PUBURLPATH%/%WEB%/%TOPIC%/Pt_resolution_40_85_SiD_02_v01.png" alt="Pt_resolution_40_85_SiD_02_v01.png" width="974" height="491" />



---+++ Pattern recognition 

Pattern recognition is a field of applied mathematics, which aim is the classification of objects. For instance, position measurements along particle trajectories can be classified as different physical objects. Please refer to the report that will be attached later on for more details on it.
---++++ How to run Conformal tracking code 

---++ Tracker optimization studies 

The aim of the  optimization studies is to optimize particularly, Tracking system for the best price/performance ratio. For example, We can look how each layer of tracker perform or how the tracking system perform with pixels versus performance with strips. For more details please refer to the report that will be attached latter on for more details on it.  

---++ Physics sensitivity studies 

Physics studies for SiD  can be following:  precise Higgs physics measurements or searches for new physics like composite Higgs models, top quarks physics.Please refer to the report that will be attached later on for more details on it.

---++ Marlin tips

For more options of running Marlin: 
<verbatim>
Marlin -? 
Particularly useful:
Marlin -c SiDReconstruction_v03_160711.xml  (check given  steering file for consistency) 
</verbatim>

Attachments

Topic attachments
I	Attachment	History	Action	Size	Date	Who	Comment
pdf	Brief_report.pdf	r1	manage	41.2 K	2016-10-13 - 19:21	BogdanMishchenko	This brief report on the progress
png	D0_resolution.png	r1	manage	19.8 K	2016-10-24 - 17:30	BogdanMishchenko	D0_resolution
png	D0_resolution_40_60_SiD_o1_v03.png	r2 r1	manage	24.8 K	2016-11-05 - 12:07	BogdanMishchenko	D0_resolution
png	D0_resolution_40_85_SiD_o1_v03_proper.png	r1	manage	25.4 K	2016-11-06 - 20:41	BogdanMishchenko	D0 resolution 40 85 SiD_o1_v03
png	D0_resolution_40_85_SiD_o2_v01.png	r4 r3 r2 r1	manage	25.3 K	2016-11-16 - 14:45	BogdanMishchenko	DO resolution for 40 85 degrees for SiD_o2_v01 model
png	D0_resolution_40_SiD_o1_v03_proper.png	r1	manage	24.8 K	2016-11-06 - 00:12	BogdanMishchenko	D0_resolution
png	D0_resolution_SiD_o2_v01_40_60.png	r1	manage	25.4 K	2016-11-15 - 12:53	BogdanMishchenko
pdf	LC-DET-2006-004.pdf	r1	manage	95.3 K	2016-11-09 - 20:23	BogdanMishchenko	linear collider parametrization
png	Pt_resolution_40_85_SiD_02_v01.png	r1	manage	24.7 K	2016-11-15 - 19:04	BogdanMishchenko	This is Pt resolution obtained with SiD_o2_v01 module
png	Pt_resolution_40_properone.png	r1	manage	22.6 K	2016-11-06 - 00:17	BogdanMishchenko	This is Pt resolution obtained with SiD_o1_v03 model
png	Screenshot-20.png	r1	manage	203.3 K	2016-10-11 - 10:41	BogdanMishchenko	tt bar event
jpeg	SiD_layout.jpeg	r1	manage	83.4 K	2016-10-11 - 10:42	BogdanMishchenko	Schematic view of SiD layout
gz	Tracking_2_12_16.tar.gz	r2 r1	manage	28.7 K	2016-12-02 - 13:29	BogdanMishchenko	Truth reconstruction package adopted from CLICPerformance
png	Tracking_efficiency_20_40_85.png	r1	manage	30.8 K	2016-11-17 - 12:02	BogdanMishchenko	Tracking efficiency for SiD_o2_v01
png	Tracking_efficiency_40_85.png	r1	manage	30.4 K	2016-11-15 - 15:06	BogdanMishchenko	Tracking efficiency for SiD_o2_v01
png	Z0_resolution.png	r2 r1	manage	25.0 K	2016-11-16 - 12:42	BogdanMishchenko	z0_resolution 40 85 deg for SiD_o2_v01
png	Z0_resolution_40_85_SiD_o2_v01.png	r1	manage	25.0 K	2016-11-16 - 12:44	BogdanMishchenko	z0_resolution 40 85 deg for SiD_o2_v01
png	Z0_resolution_40_SiD_o1_v03.png	r1	manage	22.7 K	2016-11-06 - 22:17	BogdanMishchenko	z0_resolution
png	angle_coverage.png	r1	manage	54.7 K	2016-11-11 - 16:25	BogdanMishchenko	angle_coverage
ext	d0_z0_DBR	r1	manage	65.1 K	2016-10-24 - 17:36	BogdanMishchenko	d0_from_DBR
png	d0_z0_DBR.png	r1	manage	65.1 K	2016-10-24 - 17:36	BogdanMishchenko	d0_z0_DBR
png	eff_versus_theta.png	r3 r2 r1	manage	22.9 K	2016-11-16 - 11:35	BogdanMishchenko	eff_versus_theta_SiD_o2_v01
png	p_t_resolution_DBR.png	r1	manage	72.1 K	2016-10-31 - 10:12	BogdanMishchenko	p_t_resolution from DBD 2012
png	pt_resolution_SiD_o1_v03_40_60.png	r1	manage	24.6 K	2016-11-05 - 11:47	BogdanMishchenko	This is Pt resolution obtained with SiD_o1_v03 model
jpg	pull_residuals_40.jpg	r1	manage	90.3 K	2016-10-13 - 19:43	BogdanMishchenko
png	residuals_40_tracker_barrel.png	r1	manage	30.7 K	2016-10-20 - 14:41	BogdanMishchenko	residuals_40_tracker

Topic revision: r36 - 2016-12-02 - BogdanMishchenko

LinearCollider