INSTALLING NA62 SOFTWARE ON SLC6 FROM SCRATCH (NO ROOT PRIVILEGES prefix=/afs/phas.gla.ac.uk/data/na62/software01/ExtPack=$NA62GLASOFT)
export PATH=$NA62GLASOFT/bin:$NA62GLASOFT/sbin:$PATH
export LD_LIBRARY_PATH=$NA62GLASOFT/lib64:$NA62GLASOFT/lib:$LD_LIBRARY_PATH
export PKG_CONFIG_PATH=$NA62GLASOFT/lib64/pkgconfig:$NA62GLASOFT/lib/pkgconfig:$PKG_CONFIG_PATH

===============================================================================================
- GMP library version 4.3.2
wget ftp://ftp.gnu.org/gnu/gmp/gmp-4.3.2.tar.gz
tar xzf gmp-4.3.2.tar.gz		
cd gmp-4.3.2
./configure --prefix=$NA62GLASOFT
make
make check
make install

- MPFR library version 2.4.2
wget http://www.mpfr.org/mpfr-2.4.2/mpfr-2.4.2.tar.gz
tar xzf mpfr-2.4.2.tar.gz		
cd mpfr-2.4.2
./configure --prefix=$NA62GLASOFT --with-gmp=$NA62GLASOFT
make
make check
make install

- MPC library version 1.0.3
wget ftp://ftp.gnu.org/gnu/mpc/mpc-1.0.3.tar.gz
tar xzf mpc-1.0.3.tar.gz		
cd mpc-1.0.3
./configure --prefix=$NA62GLASOFT --with-gmp=$NA62GLASOFT --with-mpfr=$NA62GLASOFT
make
make check
make install

- Compiler gcc version 4.6.3
wget ftp://ftp.mirrorservice.org/sites/sourceware.org/pub/gcc/releases/gcc-4.6.3/gcc-4.6.3.tar.gz
tar xzf gcc-4.6.3.tar.gz
mkdir gcc-4.6.3-objdir	
cd gcc-4.6.3-objdir
../gcc-4.6.3/configure --prefix=$NA62GLASOFT --with-mpc=$NA62GLASOFT --with-gmp=$NA62GLASOFT --with-mpfr=$NA62GLASOFT
make
make install

### modified in env.sh script ###
export COMPILER_PATH=$NA62GLASOFT/lib/gcc/x86_64-unknown-linux-gnu/4.6.3

=============================================================================================
- XercesC++ 3.1.2
wget http://apache.mirror.anlx.net/xerces/c/3/sources/xerces-c-3.1.2.tar.gz
tar xzf xerces-c-3.1.2.tar.gz
cd xerces-c-3.1.2
./configure --prefix=$NA62GLASOFT
make
make install

- GEANT4 9.6p01
wget http://geant4.web.cern.ch/geant4/support/source/geant4.9.6.p01.tar.gz
tar xzf geant4.9.6.p01.tar.gz
mkdir geant4.9.6.p01-builddir
cd geant4.9.6.p01-builddir
cmake -DCMAKE_INSTALL_PREFIX=$NA62GLASOFT -DGEANT4_USE_GDML=ON -DXERCESC_ROOT_DIR=$NA62GLASOFT -DGEANT4_USE_OPENGL_X11=ON -DGEANT4_USE_XM=ON -DGEANT4_USE_G3TOG4=ON ../geant4.9.6.p01
make
make install
cp $NA62GLASOFT/../custom_scripts/Geant4_Version .
cp $NA62GLASOFT/../custom_scripts/GNUmake-setup.sh $NA62GLASOFT/bin
cp $NA62GLASOFT/../custom_scripts/setup_g4datasets.sh $NA62GLASOFT/bin

- GEANT4 datasets
mkdir $NA62GLASOFT/share/Geant4-9.6.1/data
cd $NA62GLASOFT/share/Geant4-9.6.1/data
wget http://geant4.cern.ch/support/source/G4NDL.4.2.tar.gz
wget http://geant4.cern.ch/support/source/G4EMLOW.6.32.tar.gz
wget http://geant4.cern.ch/support/source/G4PhotonEvaporation.2.3.tar.gz
wget http://geant4.cern.ch/support/source/G4RadioactiveDecay.3.6.tar.gz
wget http://geant4.cern.ch/support/source/G4NEUTRONXS.1.2.tar.gz
wget http://geant4.cern.ch/support/source/G4PII.1.3.tar.gz
wget http://geant4.cern.ch/support/source/RealSurface.1.0.tar.gz
wget http://geant4.cern.ch/support/source/G4SAIDDATA.1.1.tar.gz
wget http://geant4.cern.ch/support/source/G4ABLA.3.0.tar.gz
tar xzf G4NDL.4.2.tar.gz
tar xzf G4EMLOW.6.32.tar.gz
tar xzf G4PhotonEvaporation.2.3.tar.gz
tar xzf G4RadioactiveDecay.3.6.tar.gz
tar xzf G4NEUTRONXS.1.2.tar.gz
tar xzf G4PII.1.3.tar.gz
tar xzf RealSurface.1.0.tar.gz
tar xzf G4SAIDDATA.1.1.tar.gz
tar xzf G4ABLA.3.0.tar.gz

- CLHEP 2.1.3.1
wget http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/clhep-2.1.3.1-x86_64-slc6-gcc46-opt.tgz
tar xzf clhep-2.1.3.1-x86_64-slc6-gcc46-opt.tgz
mv x86_64-slc6-gcc46-opt clhep-2.1.3.1-x86_64-slc6-gcc46-opt

- Qt 4.6.3p2
cp -r /afs/cern.ch/sw/lcg/external/qt/4.6.3p2/x86_64-slc6-gcc45-opt .
mv x86_64-slc6-gcc45-opt qt-4.6.3p2-x86_64-slc6-gcc45-opt


### modified in env.sh script ###
source $NA62GLASOFT/bin/GNUmake-setup.sh	(script copied and modified from afs)
  uses $NA62GLASOFT/bin/setup_g4datasets.sh	(script copied and modified from afs)

=======================================================================================================
- PCRE 8.36
wget ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-8.36.tar.bz2
tar jxf pcre-8.36.tar.bz2
cd pcre-8.36
./configure --prefix=$NA62GLASOFT --docdir=$NA62GLASOFT/share/doc/pcre-8.36 --enable-unicode-properties --enable-pcre16 --enable-pcre32 --enable-pcregrep-libz --enable-pcregrep-libbz2 --enable-pcretest-libreadline --disable-static
make
make install

- GLEW 1.12
wget http://downloads.sourceforge.net/project/glew/glew/1.12.0/glew-1.12.0.tgz
tar xzf glew-1.12.0.tgz
cd glew-1.12.0
cp -f $NA62GLASOFT/../custom_scripts/Makefile_glew ./Makefile
make
make install
export PATH=$HOME/software/glew-1.12.0/bin:$PATH

- FFTW 3.3.4
wget http://www.fftw.org/fftw-3.3.4.tar.gz
tar xzf fftw-3.3.4.tar.gz
cd fftw-3.3.4
./configure --prefix=$NA62GLASOFT CFLAGS=-fPIC
make
make install

- CFITSIO 3.370
wget ftp://heasarc.gsfc.nasa.gov/software/fitsio/c/cfitsio3370.tar.gz
tar xzf cfitsio3370.tar.gz
cd cfitsio
./configure --prefix=$NA62GLASOFT
make
make install

- GRAPHVIZ 2.38.0
wget http://graphviz.org/pub/graphviz/stable/SOURCES/graphviz-2.38.0.tar.gz
tar xzf graphviz-2.38.0.tar.gz
cd graphviz-2.38.0
./configure --prefix=$NA62GLASOFT  LDFLAGS=-L$NA62GLASOFT/lib64
make
make install

- LIBFFI 3.2.1
wget ftp://sourceware.org/pub/libffi/libffi-3.2.1.tar.gz
tar xzf libffi-3.2.1.tar.gz
cd libffi-3.2.1
sed -e '/^includesdir/ s/$(libdir).*$/$(includedir)/' -i include/Makefile.in
sed -e '/^includedir/ s/=.*$/=@includedir@/' -e 's/^Cflags: -I${includedir}/Cflags:/' -i libffi.pc.in
./configure --prefix=$NA62GLASOFT --disable-static
make
make install

- PYTHON 3.4.2
wget http://www.python.org/ftp/python/3.4.2/Python-3.4.2.tar.xz
tar xJf Python-3.4.2.tar.xz
cd Python-3.4.2
CXX="$NA62GLASOFT/bin/g++" ./configure --prefix=$NA62GLASOFT --enable-shared --with-system-expat --with-system-ffi --without-ensurepip
make
make install
chmod -v 755 $NA62GLASOFT/lib/libpython3.4m.so
chmod -v 755 $NA62GLASOFT/lib/libpython3.so
ln -s libpython3.4m.so.1.0 $NA62GLASOFT/lib/libpython3.4.so
ln -s python3.4 $NA62GLASOFT/bin/python

- GLIB 2.42.1
wget http://ftp.gnome.org/pub/gnome/sources/glib/2.42/glib-2.42.1.tar.xz
tar xJf glib-2.42.1.tar.xz
cd glib-2.42.1
./configure --prefix=$NA62GLASOFT
make
make install

- AT-SPI2-CORE 2.14.1
wget http://ftp.gnome.org/pub/gnome/sources/at-spi2-core/2.14/at-spi2-core-2.14.1.tar.xz
tar xJf at-spi2-core-2.14.1.tar.xz
cd at-spi2-core-2.14.1
./configure --prefix=$NA62GLASOFT
make
make install

- GOBJECT INSTROSPECTION 1.42.0
wget http://ftp.gnome.org/pub/gnome/sources/gobject-introspection/1.42/gobject-introspection-1.42.0.tar.xz
tar xJf gobject-introspection-1.42.0.tar.xz
cd gobject-introspection-1.42.0
./configure --prefix=$NA62GLASOFT --disable-static LDFLAGS=-L$NA62GLASOFT/lib64
make
make install

- ATK 2.14.0
wget http://ftp.gnome.org/pub/gnome/sources/atk/2.14/atk-2.14.0.tar.xz
tar xJf atk-2.14.0.tar.xz
cd atk-2.14.0
./configure --prefix=$NA62GLASOFT
make
make install

- AT-SPI2 ATK 2.10.0 
wget http://ftp.gnome.org/pub/GNOME/sources/at-spi2-atk/2.10/at-spi2-atk-2.10.0.tar.xz
tar xJf at-spi2-atk-2.10.0.tar.xz
cd at-spi2-atk-2.10.0
./configure --prefix=$NA62GLASOFT
make
make install

- NASM 2.11.06
wget http://www.nasm.us/pub/nasm/releasebuilds/2.11.06/nasm-2.11.06.tar.xz
tar xJf nasm-2.11.06.tar.xz
cd nasm-2.11.06
./configure --prefix=$NA62GLASOFT
make
make install

- LIBJPEG TURBO 1.4.0
wget http://downloads.sourceforge.net/libjpeg-turbo/libjpeg-turbo-1.4.0.tar.gz
tar xzf libjpeg-turbo-1.4.0.tar.gz
cd libjpeg-turbo-1.4.0
sed -i -e '/^docdir/ s:$:/libjpeg-turbo-1.4.0:' -e '/^exampledir/ s:$:/libjpeg-turbo-1.4.0:' Makefile.in
./configure --prefix=$NA62GLASOFT --mandir=$NA62GLASOFT/share/man --with-jpeg8 --disable-static
make 
make install

- LIBPNG 1.6.16
wget http://downloads.sourceforge.net/libpng/libpng-1.6.16.tar.xz
wget http://downloads.sourceforge.net/libpng-apng/libpng-1.6.16-apng.patch.gz
tar xJf libpng-1.6.16.tar.xz
cd libpng-1.6.16
gzip -cd ../libpng-1.6.16-apng.patch.gz | patch -p1
./configure --prefix=$NA62GLASOFT --disable-static
make
make install

- LIBTIFF 4.0.3
wget http://download.osgeo.org/libtiff/tiff-4.0.3.tar.gz
tar xzf tiff-4.0.3.tar.gz
cd tiff-4.0.3
sed -i '/glDrawPixels/a glFlush();' tools/tiffgt.c
./configure --prefix=$NA62GLASOFT --disable-static
make
make install

- GDK PIXBUF 2.31.2
wget http://ftp.gnome.org/pub/gnome/sources/gdk-pixbuf/2.31/gdk-pixbuf-2.31.2.tar.xz
tar xJf gdk-pixbuf-2.31.2.tar.xz
cd gdk-pixbuf-2.31.2
./configure --prefix=$NA62GLASOFT --with-x11
make
make install

- PIXMAN 0.32.6
wget http://cairographics.org/releases/pixman-0.32.6.tar.gz
tar xzf pixman-0.32.6.tar.gz
cd pixman-0.32.6
./configure --prefix=$NA62GLASOFT --disable-static
make
make install

- CAIRO 1.14.2
cd $NA62GLASOFT/software/gcc-4.6.3-objdir
make distclean
export CFLAGS=-fPIC
../gcc-4.6.3/configure --prefix=$NA62GLASOFT --with-mpc=$NA62GLASOFT --with-gmp=$NA62GLASOFT --with-mpfr=$NA62GLASOFT
make configure-libiberty
make all-libiberty
make install-libiberty
unset CFLAGS
cd ..
wget http://cairographics.org/releases/cairo-1.14.2.tar.xz
tar xJf cairo-1.14.2.tar.xz
cd cairo-1.14.2
./configure --prefix=$NA62GLASOFT --disable-static --enable-tee
make
make install

- ICU 54.1
wget http://download.icu-project.org/files/icu4c/54.1/icu4c-54_1-src.tgz
tar xzf icu4c-54_1-src.tgz
cd icu
cd source
./configure --prefix=$NA62GLASOFT
make
make install

- FREETYPE 2.5.5
wget http://downloads.sourceforge.net/freetype/freetype-2.5.5.tar.bz2
tar jxf freetype-2.5.5.tar.bz2
cd freetype-2.5.5
sed -i -e "/AUX.*.gxvalid/s@^# @@" -e "/AUX.*.otvalid/s@^# @@" modules.cfg
sed -ri -e 's:.*(#.*SUBPIXEL.*) .*:\1:' include/config/ftoption.h
./configure --prefix=$NA62GLASOFT --disable-static
make
make install
install -v -m755 -d $NA62GLASOFT/share/doc/freetype-2.5.5
cp -v -R docs/*  $NA62GLASOFT/share/doc/freetype-2.5.5
mkdir $NA62GLASOFT/include/freetype2/freetype
cp $NA62GLASOFT/include/freetype2/freetype.h $NA62GLASOFT/include/freetype2/freetype/

- HARFBUZZ 0.9.38
wget http://www.freedesktop.org/software/harfbuzz/release/harfbuzz-0.9.38.tar.bz2
tar jxf harfbuzz-0.9.38.tar.bz2
cd harfbuzz-0.9.38
./configure --prefix=$NA62GLASOFT --with-gobject LDFLAGS=-L$NA62GLASOFT/lib64
make
make install

- FREETYPE 2.5.5 re-install
cd freetype-2.5.5
make distclean
sed -i -e "/AUX.*.gxvalid/s@^# @@" -e "/AUX.*.otvalid/s@^# @@" modules.cfg
sed -ri -e 's:.*(#.*SUBPIXEL.*) .*:\1:' include/config/ftoption.h
./configure --prefix=$NA62GLASOFT --disable-static
make
make install
install -v -m755 -d $NA62GLASOFT/share/doc/freetype-2.5.5
cp -v -R docs/*  $NA62GLASOFT/share/doc/freetype-2.5.5
mkdir $NA62GLASOFT/include/freetype2/freetype
cp $NA62GLASOFT/include/freetype2/freetype.h $NA62GLASOFT/include/freetype2/freetype/

- FONTCONFIG 2.11.1
wget http://www.freedesktop.org/software/fontconfig/release/fontconfig-2.11.1.tar.bz2
tar jxf fontconfig-2.11.1.tar.bz2
cd fontconfig-2.11.1
./configure --prefix=$NA62GLASOFT --disable-docs --docdir=$NA62GLASOFT/share/doc/fontconfig-2.11.1
make
make install
install -v -dm755 $NA62GLASOFT/share/{man/man{3,5},doc/fontconfig-2.11.1/fontconfig-devel}
install -v -m644 fc-*/*.1 $NA62GLASOFT/share/man/man1
install -v -m644 doc/*.3 $NA62GLASOFT/share/man/man3
install -v -m644 doc/fonts-conf.5 $NA62GLASOFT/share/man/man5
install -v -m644 doc/fontconfig-devel/* $NA62GLASOFT/share/doc/fontconfig-2.11.1/fontconfig-devel
install -v -m644 doc/*.{pdf,sgml,txt,html} $NA62GLASOFT/share/doc/fontconfig-2.11.1

- PANGO 1.36.8
wget http://ftp.gnome.org/pub/gnome/sources/pango/1.36/pango-1.36.8.tar.xz
tar xJf pango-1.36.8.tar.xz
cd pango-1.36.8
./configure --prefix=$NA62GLASOFT LDFLAGS=-L$NA62GLASOFT/lib64
make
make install

- GTK 3.14.8
wget http://ftp.gnome.org/pub/gnome/sources/gtk+/3.14/gtk+-3.14.8.tar.xz
tar xJf gtk+-3.14.8.tar.xz
cd gtk+-3.14.8
./configure --prefix=$NA62GLASOFT --enable-broadway-backend --enable-x11-backend --disable-wayland-backend LDFLAGS=-L$NA62GLASOFT/lib64
make
make install

- LIBDAEMON 0.14
wget http://0pointer.de/lennart/projects/libdaemon/libdaemon-0.14.tar.gz
tar xzf libdaemon-0.14.tar.gz
cd libdaemon-0.14
./configure --prefix=$NA62GLASOFT --disable-static
make
make docdir=$NA62GLASOFT/share/doc/libdaemon-0.14 install

- AVAHI 0.6.31
wget http://avahi.org/download/avahi-0.6.31.tar.gz
tar xzf avahi-0.6.31.tar.gz
cd avahi-0.6.31
sed -i 's/\(CFLAGS=.*\)-Werror \(.*\)/\1\2/' configure
sed -e 's/-DG_DISABLE_DEPRECATED=1//' -e '/-DGDK_DISABLE_DEPRECATED/d' -i avahi-ui/Makefile.in
./configure --prefix=$NA62GLASOFT --disable-static --disable-mono --disable-monodoc --disable-python --disable-qt3 --disable-qt4 --enable-core-docs --with-distro=none --with-systemdsystemunitdir=no --enable-compat-libdns_sd LDFLAGS=-L$NA62GLASOFT/lib64
make
make install

- OPENLDAP 2.4.40
wget ftp://ftp.openldap.org/pub/OpenLDAP/openldap-release/openldap-2.4.40.tgz
wget http://www.linuxfromscratch.org/patches/blfs/svn/openldap-2.4.40-consolidated-1.patch
tar xzf openldap-2.4.40.tgz
cd openldap-2.4.40
patch -Np1 -i ../openldap-2.4.40-consolidated-1.patch
autoconf
./configure --prefix=$NA62GLASOFT --disable-static --enable-dynamic --disable-debug --disable-slapd
make depend
make
make install

- ROOT 5.34.17
wget http://root.cern.ch/download/root_v5.34.17.source.tar.gz
tar xzf root_v5.34.17.source.tar.gz
cd root
cp -f /afs/phas.gla.ac.uk/data/na62/software01/custom_scripts/configure_root ./configure
mv $NA62GLASOFT/lib/libstdc++.so $NA62GLASOFT/lib/libstdc++.so32
ln -s $NA62GLASOFT/lib64/libstdc++.so $NA62GLASOFT/lib/libstdc++.so
mv $NA62GLASOFT/lib/libgcc_s.so $NA62GLASOFT/lib/libgcc_s.so32
ln -s $NA62GLASOFT/lib64/libgcc_s.so $NA62GLASOFT/lib/libgcc_s.so
./configure linuxx8664gcc --with-glew-incdir=$NA62GLASOFT/include --with-glew-libdir=$NA62GLASOFT/lib64 --with-fftw3-incdir=$NA62GLASOFT/include --with-fftw3-libdir=$NA62GLASOFT/lib --with-cfitsio-incdir=$NA62GLASOFT/include --with-cfitsio-libdir=$NA62GLASOFT/lib --with-gviz-incdir=$NA62GLASOFT/include/graphviz --with-gviz-libdir=$NA62GLASOFT/lib --with-dnssd-incdir=$NA62GLASOFT/include/avahi-compat-libdns_sd --with-dnssd-libdir=$NA62GLASOFT/lib --with-ldap-incdir=$NA62GLASOFT/include --with-ldap-libdir=$NA62GLASOFT/lib --with-python-incdir=$NA62GLASOFT/include/python3.4m --with-python-libdir=$NA62GLASOFT/lib
make
g++ -shared -Wl,-soname,libASImage.so -m64 -O2 -Wl,--no-undefined -Wl,--as-needed -o lib/libASImage.so graf2d/asimage/src/TASImage.o graf2d/asimage/src/TASPluginGS.o graf2d/asimage/src/G__ASImage.o -Llib -lGraf -lMathCore lib/libAfterImage.a -L$NA62GLASOFT/lib -lfreetype -ljpeg -lpng -lz -lz -lXpm -lXext -lX11 -Llib -lCore -lCint -ldl -ltiff
make
mv $NA62GLASOFT/lib/libgcc_s.so $NA62GLASOFT/lib/libgcc_s.so64
mv $NA62GLASOFT/lib/libstdc++.so $NA62GLASOFT/lib/libstdc++.so64
mv $NA62GLASOFT/lib/libstdc++.so32 $NA62GLASOFT/lib/libstdc++.so
mv $NA62GLASOFT/lib/libgcc_s.so32 $NA62GLASOFT/lib/libgcc_s.so


### modified in env.sh script ###
export ROOTSYS=$NA62GLASOFT/software/root

=======================================================================================================
- BOOST 1.48.0_python2.7
wget http://downloads.sourceforge.net/project/boost/boost/1.48.0/boost_1_48_0.tar.gz
tar xzf boost_1_48_0.tar.gz
cd boost_1_48_0
./bootstrap.sh --prefix=$NA62GLASOFT
./b2 install


### modified in env.sh script ###
export BOOST=$NA62GLASOFT
### modified in GNUmakefile ###
CPPFLAGS += -IPersistency/include $(ROOTCFLAGS) -fPIC $(DEFINES) -I$(LOCALDIR)/Beam/include -I$(BOOST)/include
EXTRALIBS += -L/lib64 -L/usr/X11R6/lib64 $(ROOTLIBS) -L$(SQLITE)/lib -lsqlite3 -L$(BOOST)/lib -lboost_thread -lboost_wave -lboost_serialization -lboost_filesystem -lboost_filesystem -lboost_system -llzma

=======================================================================================================
- SQLITE 3070900
wget http://pkgs.fedoraproject.org/repo/pkgs/sqlite/sqlite-src-3070900.zip/b2646c5a0c0b5bc6b8f0b67fc318bab3/sqlite-src-3070900.zip
unzip sqlite-src-3070900.zip
mkdir sqlite-build-3070900
cd sqlite-build-3070900
../sqlite-src-3070900/configure --prefix=$NA62GLASOFT --disable-tcl
make
make install


### modified in env.sh script ###
export SQLITE=$NA62GLASOFT

=======================================================================================================
- XROOTD 3.2.7
wget http://xrootd.cern.ch/cgi-bin/cgit.cgi/xrootd/snapshot/xrootd-3.2.7.tar.bz2
tar xf xrootd-3.2.7.tar.bz2
tar czf xrootd-3.2.7.tar.gz xrootd-3.2.7/
cd $ROOTSYS/build/unix
./installXrootd.sh $NA62GLASOFT -t $NA62GLASOFT/software/xrootd-3.2.7.tar.gz -v 3.2.7


### modified in env.sh script ###
export XROOTD=$NA62GLASOFT/xrootd-3.2.7